Showing : software error • reset
0
votes
14
replies
2.8k
views
Error while opening Mart with biomaRt package
software error ensembl biomart
6.0 years ago loicborcard01 • 0
0
votes
1
reply
1.1k
views
CNV plot using cn.mops
cnv R plot visualization cn.mops software error
6.0 years ago ari • 0
0
votes
4
replies
1.4k
views
Error while installing RforMassSpectrometry
software error
updated 6.0 years ago by 1.6k • written 6.0 years ago by • 0
2
votes
6
replies
3.7k
views
featureCount error - cannot identify gene_id
dexseq rsubread featureCount software error
updated 6.0 years ago by ▴ 450 • written 6.0 years ago by • 0
0
votes
2
replies
2.8k
views
DO.db is missing after repeated installations-ReactomePA-ClusterProfiler-DOSE
software error reactomePA DOSE DO.db there is no package called ‘DO.db’
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
0
votes
1
reply
426
views
DESeq2 not loading
software error
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
2
replies
2.0k
views
RNA-seq from Nanopore featureCounts
software error annotation
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
2
votes
3
replies
3.4k
views
problems with "hclust" installation
software error
updated 6.0 years ago by ★ 4.0k • written 6.0 years ago by • 0
1
vote
9
replies
1.3k
views
hypergraph package - kcores error
software error hypergraph
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
1
vote
1
reply
1.5k
views
Error with installation of org.Hs.eg.db
software error org.Hs.eg.db
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
1
reply
661
views
ENCODExplorer metadata Questions
annotation software error ENCODE
updated 6.0 years ago by 4.2k • written 6.0 years ago by • 0
1
vote
1
reply
919
views
diffBind volcano plot error
DiffBind volcano plot software error
6.0 years ago rbronste ▴ 60
0
votes
7
replies
4.0k
views
Assembly report error for hg19 in GenomeInfoDb
software error GenomeInfoDb HTGTS Transloc-pipeline TranslocHotspots.R
updated 4.7 years ago by ▴ 130 • written 6.1 years ago by • 0
0
votes
1
reply
768
views
Question about BiocManager and genefilter package
software error
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
6
votes
12
replies
2.5k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek software error
6.1 years ago • updated 6.0 years ago nils.hassel • 0
4
votes
5
replies
1.2k
views
GeneRfold not available anymore ?
GeneRfold software error
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
1
vote
3
replies
1.0k
views
Why I can load the packages I had detached?
software error
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
2
votes
11
replies
2.8k
views
failure importing data with tximport with error information
software error tximport hdf5
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 10
1
vote
2
replies
999
views
error when using biomart to exchange gene ID
software error annotation
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 20
0
votes
2
replies
17k
views
Error: install Bioconductor packages using BiocManager
software error
updated 6.1 years ago by 4.2k • written 6.1 years ago by • 0
0
votes
2
replies
1.2k
views
Trying to download VIPER
software error viper
updated 6.1 years ago by ★ 13k • written 6.1 years ago by • 0
2
votes
6
replies
2.8k
views
Error in running ATACseqQC
software error
6.1 years ago Fei Liu • 0
1
vote
1
reply
1.5k
views
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
software error annotation
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
2
votes
1
reply
1.5k
views
404 Not Found error in FELLA
FELLA software error
6.1 years ago sergi.picart ▴ 20
0
votes
1
reply
605
views
DiffBind with paired-end ChIP-seq data
software error
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
0
votes
1
reply
1.9k
views
Cannot Install Org.Hs.eg.db package in RStudio
software error annotation go
updated 6.1 years ago by 4.2k • written 6.1 years ago by • 0
1
vote
6
replies
25k
views
Log2FC data type error in EnhansedVolcano package
software error enhancedvolcano
6.1 years ago sauuyer ▴ 10
1
vote
2
replies
2.0k
views
TCGAanalyze_DEA ERROR of TCGAbiolinks
software error
updated 3.1 years ago by • 0 • written 6.2 years ago by • 0
4
votes
3
replies
1.2k
views
Does anyone experience expired certificates of BioConductor?
software error
updated 6.1 years ago by 4.2k • written 6.1 years ago by ▴ 20
4
votes
3
replies
4.0k
views
TxDb error: external pointer is not valid
software error GenomicFeatures
6.2 years ago • updated 6.1 years ago O. William McClung • 0
2
votes
5
replies
2.9k
views
"ERROR: cannot create temp file" when using buildindex from Rsubread
software error Rsubread buildindex
updated 4.2 years ago by ▴ 450 • written 6.1 years ago by • 0
0
votes
1
reply
1.9k
views
Annotationhub V2.16.1 Error info
annotation software error
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
1
vote
1
reply
1.9k
views
Unused argument error using the DOSE package setReadable function
software error
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
1
vote
2
replies
3.0k
views
package chorddiag is not available (for R version 3.6.1)
software error
6.2 years ago Jack • 0
0
votes
2
replies
734
views
scan error in biomaRt with non-Ensemble datsets
software error
updated 6.2 years ago by ★ 6.6k • written 6.2 years ago by • 0
1
vote
6
replies
2.9k
views
Error on Rhtslib package installation
software error Rhtslib zlib.h
updated 6.2 years ago by 16k • written 6.2 years ago by • 0
0
votes
1
reply
696
views
Help with CNOGpro
software error
6.2 years ago Neu.S ▴ 10
1
vote
1
reply
1.6k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
6.2 years ago ryleehackley • 0
0
votes
1
reply
2.2k
views
Installation of DECIPHER
software error
updated 6.2 years ago by 4.2k • written 6.2 years ago by • 0
0
votes
2
replies
769
views
Is biomaRt server down
software error
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
0
votes
1
reply
1.1k
views
Error using simpleaffy
software error simpleaffy genefilter
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
0
votes
1
reply
1.3k
views
Bio Conductor offline installation
software error
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
2
votes
3
replies
9.1k
views
Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager
software error
6.2 years ago Aki Hoji ▴ 10
0
votes
0
replies
374
views
System Crash with Command "removeBimeraDenovo"
software error
6.2 years ago himani.khurana1 • 0
2
votes
2
replies
1.5k
views
What to do when a bug is found in a BioConductor package (Glimma)
glimma software error
updated 6.3 years ago by 53k • written 6.3 years ago by ▴ 10
1
vote
3
replies
1.9k
views
seqVCF2GDS Error Converting VCF to GDS file
software error SeqArray seqVCF2GDS
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by ▴ 10
0
votes
2
replies
4.2k
views
R Version 3.6.1
software error Tutorial
updated 6.3 years ago by 1.6k • written 6.3 years ago by • 0
0
votes
10
replies
3.3k
views
tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
software error RNAseq tximport R
updated 6.3 years ago by 43k • written 6.3 years ago by • 0
0
votes
0
replies
645
views
readVcf: duplicated records produced importing 1kG vcf
software error
6.3 years ago sskimb ▴ 10
0
votes
1
reply
665
views
SELEX-seq NRLB package
software error
6.3 years ago aliceathan • 0
704 results • Page 4 of 15
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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